X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fvarna.html;h=77f56dc95a11ba1198114043aaa1973a563c1f77;hb=b1e2aea95b3839a1a53f809c579666075cd3d348;hp=5bccdc0d891bc4fc25db617cb7217fe57d0583c0;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/help/html/features/varna.html b/help/html/features/varna.html index 5bccdc0..77f56dc 100644 --- a/help/html/features/varna.html +++ b/help/html/features/varna.html @@ -23,54 +23,71 @@
The VARNA RNA Viewer
-VARNA was -integrated into Jalview 2.8 to allow interactive viewing of RNA secondary structure annotation. It is opened by -selecting the "Structure→View -Structure:" option in -the sequence id pop-up menu (if -you can't see this, then no RNA structure is associated with your -sequence or alignment). In the pop-up menu all structures that -are associated with this sequence and all sequences that are -associated with the alignment are available. +
+ The VARNA RNA Viewer +
++ VARNA was integrated into Jalview + 2.8 to allow interactive viewing of RNA secondary structure + annotation. It is opened by selecting the "Structure→View + Structure:" option in the sequence + id pop-up menu (if you can't see this, then no RNA structure is + associated with your sequence or alignment). In the pop-up menu all + structures that are associated with this sequence and all sequences + that are associated with the alignment are available. +
+ Saving a Jalview session as a project file includes the state of any + Varna viewers, which are reopened when the project is reloaded (since + Jalview 2.9). +
+ Different structures +
+
+ Controls
+
Different structures
-Controls
-
Functionality provided by VARNA
-VARNA's own functions are accessed by right-clicking in the -structure display area. That will open the VARNA pop-up menu, -which provides access to a number of features like different draw algorithm, color highlighting or annotations. -
-More Information
-VARNA is a very powerful RNA viewer on its own. Only the -essentials have been described here - the interested reader is -referred to VARNA's own -comprehensive online documentation.
++ Functionality provided by VARNA +
+VARNA's own functions are accessed by right-clicking in the + structure display area. That will open the VARNA pop-up menu, which + provides access to a number of features like different draw + algorithm, color highlighting or annotations.
++ More Information +
++ VARNA is a very powerful RNA viewer on its own. Only the essentials + have been described here - the interested reader is referred to VARNA's + own comprehensive online documentation. +