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+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see
The VARNA RNA Viewer
-Since Jalview -2.7.1, VARNA has been -integrated into Jalview for interactively viewing structures opened by -selecting the "Structure→View -Structure:" option in -the sequence id pop-up menu (if -you can't see this, then no RNA structure is associated with your -sequence or alignment. In the pop-up menu all structures that -are associated with this sequence and all sequences that are -associated with the alignment are available. +
+ The VARNA RNA Viewer +
++ VARNA was integrated into Jalview + 2.8 to allow interactive viewing of RNA secondary structure + annotation. It is opened by selecting the "Structure→View + Structure:" option in the sequence + id pop-up menu (if you can't see this, then no RNA structure is + associated with your sequence or alignment). In the pop-up menu all + structures that are associated with this sequence and all sequences + that are associated with the alignment are available. +
+ Saving a Jalview session as a project file includes the state of any + Varna viewers, which are reopened when the project is reloaded (since + Jalview 2.9). +
+ Different structures +
+
+ Controls
+
Different structures
-Controls
-
Functionality provided by VARNA
-VARNA's own functions are accessed by right-clicking in the -structure display area. That will open the VARNA pop-up menu, -which provides access to a number of features like different draw algorithm, color highlighting or annotations. -
-More Information
-VARNA is a very powerful RNA viewer on its own. Only the -essentials have been described here - the interested reader is -referred to VARNA's own -comprehensive online documentation.
++ Functionality provided by VARNA +
+VARNA's own functions are accessed by right-clicking in the + structure display area. That will open the VARNA pop-up menu, which + provides access to a number of features like different draw + algorithm, color highlighting or annotations.
++ More Information +
++ VARNA is a very powerful RNA viewer on its own. Only the essentials + have been described here - the interested reader is referred to VARNA's + own comprehensive online documentation. +