X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fvarna.html;h=ad3ed0808b676d5bc7db22d9124397c2c47d364d;hb=34a685e3f7f8eab7a6f5b2b93a9ff199172d38a4;hp=69c3e36d0be268e1fe62b69daf600be02b422d25;hpb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;p=jalview.git diff --git a/help/html/features/varna.html b/help/html/features/varna.html index 69c3e36..ad3ed08 100644 --- a/help/html/features/varna.html +++ b/help/html/features/varna.html @@ -1,74 +1,93 @@ + --> The VARNA RNA Viewer -

The VARNA RNA Viewer

-

VARNA was -integrated into Jalview 2.8 to allow interactive viewing of RNA secondary structure annotation. It is opened by -selecting the "Structure→View -Structure:" option in -the sequence id pop-up menu (if -you can't see this, then no RNA structure is associated with your -sequence or alignment. In the pop-up menu all structures that -are associated with this sequence and all sequences that are -associated with the alignment are available. +

+ The VARNA RNA Viewer +

+

+ VARNA was integrated + into Jalview 2.8 to allow interactive viewing of RNA secondary + structure annotation. It is opened by selecting the "Structure→View + Structure:" option in the sequence + id pop-up menu (if you can't see this, then no RNA structure is + associated with your sequence or alignment). In the pop-up menu all + structures that are associated with this sequence and all sequences + that are associated with the alignment are available. +

+ Saving a Jalview session as a project file includes the state of any + Varna viewers, which are reopened when the project is reloaded (since + Jalview 2.9). +

+ Different structures +

+ +

+ Controls
+

-

Different structures

-