X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fvarna.html;h=ad3ed0808b676d5bc7db22d9124397c2c47d364d;hb=dbd9a22891bded630623f94d78eee8a39f387051;hp=bfaa5b16f2c9b97a10977638fc6d002ca7e0a58b;hpb=a8f483d04205bb8273ee311c12968b7e86d205fa;p=jalview.git diff --git a/help/html/features/varna.html b/help/html/features/varna.html index bfaa5b1..ad3ed08 100644 --- a/help/html/features/varna.html +++ b/help/html/features/varna.html @@ -1,74 +1,93 @@ + -->
The VARNA RNA Viewer
-VARNA was -integrated into Jalview 2.8 to allow interactive viewing of RNA secondary structure annotation. It is opened by -selecting the "Structure→View -Structure:" option in -the sequence id pop-up menu (if -you can't see this, then no RNA structure is associated with your -sequence or alignment. In the pop-up menu all structures that -are associated with this sequence and all sequences that are -associated with the alignment are available. +
+ The VARNA RNA Viewer +
++ VARNA was integrated + into Jalview 2.8 to allow interactive viewing of RNA secondary + structure annotation. It is opened by selecting the "Structure→View + Structure:" option in the sequence + id pop-up menu (if you can't see this, then no RNA structure is + associated with your sequence or alignment). In the pop-up menu all + structures that are associated with this sequence and all sequences + that are associated with the alignment are available. +
+ Saving a Jalview session as a project file includes the state of any + Varna viewers, which are reopened when the project is reloaded (since + Jalview 2.9). +
+ Different structures +
+
+ Controls
+
Different structures
-Controls
-
Functionality provided by VARNA
-VARNA's own functions are accessed by right-clicking in the -structure display area. That will open the VARNA pop-up menu, -which provides access to a number of features like different draw algorithm, color highlighting or annotations. -
-More Information
-VARNA is a very powerful RNA viewer on its own. Only the -essentials have been described here - the interested reader is -referred to VARNA's own -comprehensive online documentation.
++ Functionality provided by VARNA +
+VARNA's own functions are accessed by right-clicking in the + structure display area. That will open the VARNA pop-up menu, which + provides access to a number of features like different draw + algorithm, color highlighting or annotations.
++ More Information +
++ VARNA is a very powerful RNA viewer on its own. Only the essentials + have been described here - the interested reader is referred to VARNA's own comprehensive online documentation. +