X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fviewingpdbs.html;h=0fcbbf9290360fcfe3d5346c8490e0277f93be0c;hb=f4766a7bbcfae845fc95923b01fa14ff83d589ff;hp=f60da1af5b69682a55b3003d93c94af9e37e106a;hpb=163ed5b997bbda48e4cdd950e87a8fe01baae7fb;p=jalview.git diff --git a/help/html/features/viewingpdbs.html b/help/html/features/viewingpdbs.html index f60da1a..0fcbbf9 100755 --- a/help/html/features/viewingpdbs.html +++ b/help/html/features/viewingpdbs.html @@ -76,14 +76,12 @@
- Structure Viewers in the Jalview Desktop
- The
- Jmol viewer has been included since Jalview
- 2.3. Jalview 2.8.2 included support for
- Chimera, provided it is installed and can
- be launched by Jalview. The default viewer can be configured in the
- Structure tab in the
- Tools→Preferences dialog box.
+ Structure Viewers in the Jalview Desktop
The
+ Jmol viewer has been included since Jalview
+ 2.3. Jalview 2.8.2 included support for Chimera,
+ provided it is installed and can be launched by Jalview. The default
+ viewer can be configured in the Structure
+ tab in the Tools→Preferences dialog box.
Structure data imported into Jalview can also be processed to display secondary structure and temperature factor annotation. See @@ -97,12 +95,15 @@ whether structure views already exist for the selected structures or aligned sequences.
+If multiple structures are selected, then Jalview will always + create a new structure view. The selected structures will be + imported into this view, and superposed with the matched positions + from the aligned sequences. A message in the structure viewer's + status bar will be shown if not enough aligned columns were + available to perform a superposition.
- If multiple structures are selected, then Jalview will always create
- a new structure view. The selected structures will be imported into
- this view, and superposed with the matched positions from the
- aligned sequences.
If a single PDB structure
- is selected, one of the following will happen:
+ If a single PDB structure is selected, one of the
+ following will happen: