X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fviewingpdbs.html;h=506beef6e1f5df2316f89952f9d69e94c8abc46b;hb=43d326c3a7616aedecfce6f7980b3831ec25243a;hp=8fc557e3bbd0a1a89ebef6519e19fdb1994dc001;hpb=cedd8bb81245ba719e6d54688d763e341b3cc695;p=jalview.git diff --git a/help/html/features/viewingpdbs.html b/help/html/features/viewingpdbs.html index 8fc557e..506beef 100755 --- a/help/html/features/viewingpdbs.html +++ b/help/html/features/viewingpdbs.html @@ -1,7 +1,7 @@ -

If a single pdb +

If a single pdb structure is selected, one of the following will happen:

See the Jmol and Chimera PDB viewer help pages for more information about the display.

Associating PDB files with Sequences

To associate PDB files with a sequence, right click on a sequence -ID and select "Structure→ Associate Structure with -Sequence", and one of the submenus:

- -

From File - You can load a PDB file from the local machine or - network and associate it with the selected sequence. PDB files - associated in this way will also be saved in the Jalview Archive file.
-
Enter PDB Id - Jalview will use WSDBFetch, provided by the - EBI, to fetch the PDB file with the entered Id.
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Discover PDB Ids - Jalview uses the sequence's ID to query WSDBFetch, provided by the - EBI, and any enabled DAS servers, to discover PDB ids associated with the sequence.

Importing PDB Entries or files in PDB format
You can retrieve sequences from the PDB using the