X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fviewingpdbs.html;h=75a5c9cd32bace353f9e504c84b7ecb72d0de62b;hb=71fc0e8716067e0d1100f82cced73c38bfb8d7f6;hp=1f49498da88dbc013c856e6a395845fb4801ba6a;hpb=e5cbd35e13f46ae1d59a08b0af1086677418141d;p=jalview.git diff --git a/help/html/features/viewingpdbs.html b/help/html/features/viewingpdbs.html index 1f49498..75a5c9c 100755 --- a/help/html/features/viewingpdbs.html +++ b/help/html/features/viewingpdbs.html @@ -24,11 +24,26 @@
Viewing PDB Structures
- -Jalview can view protein structures associated with a sequence -via the "Structure→" submenu from a -sequence's pop-up menu.
-The following menu entries are provided for viewing structure data
+
+ Jalview can view protein structures associated with a sequence via the + "Structure→" submenu from a sequence's pop-up menu. +
+ The + Jmol viewer has been included since Jalview + 2.3. Jalview 2.8.2 included support for + Chimera, provided it is + installed and can be launched by Jalview. The default viewer can be + configured in the + Structure tab in the + Tools→Preferences dialog box. ++ Structure data imported into Jalview can also be processed to display + secondary structure and temperature factor annotation. See the Annotation from Structure page for + more information. +
+The following menu entries are provided for viewing structure data
If a single pdb @@ -55,19 +69,19 @@ structure is selected, one of the following will happen:
Associating PDB files with Sequences
To associate PDB files with a sequence, right click on a sequence