X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2Fviewingpdbs.html;h=99f17fe1c3388bd79d576d2b4fb6a5b721659bb6;hb=e4868e3c7279d9c5719dc0394eadedbcd6f21348;hp=8fc557e3bbd0a1a89ebef6519e19fdb1994dc001;hpb=edd783fd9751100b5f7f54608cc942013d6075fb;p=jalview.git diff --git a/help/html/features/viewingpdbs.html b/help/html/features/viewingpdbs.html index 8fc557e..99f17fe 100755 --- a/help/html/features/viewingpdbs.html +++ b/help/html/features/viewingpdbs.html @@ -24,14 +24,25 @@

Viewing PDB Structures

- -

Jalview can view protein structures associated with a sequence -via the "Structure→" submenu from a -sequence's pop-up menu.

-A Jmol viewer has been included since Jalview 2.3. Jalview 2.8.2 added support for Chimera, -provided this has been separately installed. Choice of default viewer is configurable in the Preferences Structure tab. - -

The following menu entries are provided for viewing structure data
+

+ Jalview can view protein structures associated with a sequence via the + "Structure→" submenu from a sequence's pop-up menu. +

+ The + Jmol viewer has been included since Jalview + 2.3. Jalview 2.8.2 included support for Chimera, provided it is + installed and can be launched by Jalview. The default viewer can be + configured in the + Structure tab in the + Tools→Preferences dialog box. +

+ Structure data imported into Jalview can also be processed to display + secondary structure and temperature factor annotation. See the Annotation from Structure page for + more information. +

+

The following menu entries are provided for viewing structure data