X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Findex.html;h=46373c76f3768e7ec92f23021d765197593b9f8c;hb=d79235eeb9913fa59f5f4e635a2a8c39d80c775b;hp=0e65d9079a1c2aa90c4e2f31ad8021d653a167d2;hpb=900b37212594e2f24771caf9cde6989e0751c848;p=jalview.git diff --git a/help/html/index.html b/help/html/index.html index 0e65d90..46373c7 100755 --- a/help/html/index.html +++ b/help/html/index.html @@ -1,17 +1,79 @@ - -
Jalview
- Documentation
-JalView (1999) is a fast Java multiple alignment editor and analysis tool. It -features many of the functions of AMAS, -for the analysis of sub-families and the prediction of functional sites, but is -fully interactive. - -
If you use JalView in your work, please cite the bioinformatics paper:
-Clamp, M., Cuff, J., Searle, S. M. and Barton, G. J. (2004), "The Jalview - Java Alignment Editor", Bioinformatics, 12, 426-7.
- - + + +Welcome to Jalview's built in documentation.
+Here are some good places to start:
+ For more information, you might also want to take a look at the + documentation section of the Jalview website (http://www.jalview.org/about/documentation). +
++ If you are using the Jalview Desktop application and are looking for + something specific, then try the search box (next to the print icon). + If you're already viewing this in your web browser, then google the + online version of these pages. If you don't find what you are looking + for, or want to report a bug or make a feature request, then get in + contact over at http://www.jalview.org/community +
+ +Citing Jalview
If you use Jalview in your work, please cite the Jalview 2 paper in Bioinformatics:
Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M., Barton, G.J (2009),
+ "Jalview version 2: A Multiple Sequence Alignment and Analysis Workbench,"
+ Bioinformatics 25 (9) 1189-1191 doi: 10.1093/bioinformatics/btp033
The Jalview Authors
+ The following people have contributed to Jalview's development:
+