X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Findex.html;h=62b46a905c1bd2b4006c14fd44dbcfe0ef3d9f73;hb=37de9310bec3501cbc6381e0c3dcb282fcaad812;hp=47513c8c630c114b2ce61ceeac244afc95a6d155;hpb=85fb1c79fd82d7eada801624f745635632be8362;p=jalview.git diff --git a/help/html/index.html b/help/html/index.html index 47513c8..62b46a9 100755 --- a/help/html/index.html +++ b/help/html/index.html @@ -1,18 +1,102 @@ -Home Page + + +Jalview Documentation + - -

-Jalview Documentation -

-Jalview (2004) is a fast Java multiple alignment editor and analysis tool. It -features many of the functions of AMAS, -for the analysis of sub-families and the prediction of functional sites, but is -fully interactive. (View the Jalview homepage). -

-

If you use Jalview in your work, please cite the bioinformatics paper:

-

Clamp, M., Cuff, J., Searle, S. M. and Barton, G. J. (2004), "The Jalview - Java Alignment Editor", Bioinformatics, 20, 426-7.

+ +

+ Welcome to Jalview's built in documentation. +

+

Here are some good places to start:

+ +

+ For more information, you might also want to take a look at the + documentation section of the Jalview website (http://www.jalview.org/about/documentation). +

+

+ If you are using the Jalview Desktop application and are looking for + something specific, then try the search box (next to the print + icon). If you're already viewing this in your web browser, then + google the online version of these pages. If you don't find what you + are looking for, or want to report a bug or make a feature request, + then get in contact over at http://www.jalview.org/community +

+ +

+ Citing Jalview
If you use Jalview in your + work, please cite the Jalview 2 paper in Bioinformatics: +

+

+ Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M., Barton, + G.J (2009),
"Jalview version 2: A Multiple Sequence + Alignment and Analysis Workbench,"
Bioinformatics + 25 (9) 1189-1191 doi: 10.1093/bioinformatics/btp033 +

+

+ The Jalview Authors
The following people + have contributed to Jalview's development: +

+