X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Findex.html;h=62b46a905c1bd2b4006c14fd44dbcfe0ef3d9f73;hb=dc56d975105f135b5fd37a22913d164df51a02d8;hp=2ad046214eb42b87f50a121401cf2eea38895beb;hpb=3396e9f33cf3a16a7f38f5163cd057df4b859e7e;p=jalview.git diff --git a/help/html/index.html b/help/html/index.html index 2ad0462..62b46a9 100755 --- a/help/html/index.html +++ b/help/html/index.html @@ -1,16 +1,102 @@ - -Home Page - - -

Jalview - Documentation

-

 

-JalView (1999) is a fast Java multiple alignment editor and analysis tool. It -features many of the functions of AMAS, for the analysis of sub-families and the -prediction of functional sites, but is fully interactive. -

-

If you use JalView in your work, please cite the bioinformatics paper:

-

Clamp, M., Cuff, J., Searle, S. M. and Barton, G. J. (2004), "The Jalview - Java Alignment Editor", Bioinformatics, 12, 426-7.

- - + + + +Jalview Documentation + + + + +

+ Welcome to Jalview's built in documentation. +

+

Here are some good places to start:

+ +

+ For more information, you might also want to take a look at the + documentation section of the Jalview website (http://www.jalview.org/about/documentation). +

+

+ If you are using the Jalview Desktop application and are looking for + something specific, then try the search box (next to the print + icon). If you're already viewing this in your web browser, then + google the online version of these pages. If you don't find what you + are looking for, or want to report a bug or make a feature request, + then get in contact over at http://www.jalview.org/community +

+ +

+ Citing Jalview
If you use Jalview in your + work, please cite the Jalview 2 paper in Bioinformatics: +

+

+ Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M., Barton, + G.J (2009),
"Jalview version 2: A Multiple Sequence + Alignment and Analysis Workbench,"
Bioinformatics + 25 (9) 1189-1191 doi: 10.1093/bioinformatics/btp033 +

+

+ The Jalview Authors
The following people + have contributed to Jalview's development: +

+

+ +