X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Findex.html;h=80ce3ade9206b693883c80bef70b4bfb01da2860;hb=80c223c45fde0899c9794e887801dd82fffd3452;hp=460c5b9be9c9e20936e0c305ebba15371388f4e9;hpb=6fa9683bef52d6709abb81840681e4fa452cafe7;p=jalview.git diff --git a/help/html/index.html b/help/html/index.html index 460c5b9..80ce3ad 100755 --- a/help/html/index.html +++ b/help/html/index.html @@ -1,15 +1,49 @@ - - -
-Jalview - Documentation
--JalView (1999) is a fast Java multiple alignment editor and analysis tool. It -features many of the functions of AMAS, for the analysis of sub-families and the -prediction of functional sites, but is fully interactive. - -
If you use JalView in your work, please cite the bioinformatics paper:
-Clamp, M., Cuff, J., Searle, S. M. and Barton, G. J. (2004), "The Jalview - Java Alignment Editor", Bioinformatics, 12, 426-7.
- - + + +Welcome to Jalview's built in documentation.
+Here are some good places to start:
+ For more information, you might also want to take a look at the + documentation section of the Jalview website (http://www.jalview.org/about/documentation). +
++ If you are using the Jalview Desktop application and are looking for + something specific, then try the search box (next to the print icon). + If you're already viewing this in your web browser, then google the + online version of these pages. If you don't find what you are looking + for, or want to report a bug or make a feature request, then get in + contact over at http://www.jalview.org/community +
+ +Citing Jalview
If you use Jalview in your work, please cite the Jalview 2 paper in Bioinformatics:
Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M., Barton, G.J (2009),
+ "Jalview version 2: A Multiple Sequence Alignment and Analysis Workbench,"
+ Bioinformatics 25 (9) 1189-1191 doi: 10.1093/bioinformatics/btp033