X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fio%2Fexport.html;h=46e7fe47ea0cb465f0b3cdbb24f99b76d64df67d;hb=4aae950e66ed30fb4ac50dcbae4257bfda2518fc;hp=c3270c7f4ec398f4cc136671ad82e07655d86212;hpb=82bb69383ab22735cbd3440c670ae0b290fe6afd;p=jalview.git
diff --git a/help/html/io/export.html b/help/html/io/export.html
index c3270c7..46e7fe4 100755
--- a/help/html/io/export.html
+++ b/help/html/io/export.html
@@ -25,30 +25,28 @@
Exporting alignments as graphics and lineart
+ name="export"
+ >
The alignment view can be printed using File→Print,
or exported in a number of ways via the File→Export
menu:
-
- - HTML
- for viewing in a web browser
+ - HTML
for viewing in a web browser
- - PNG - a Portable Networks Graphics image
- For low quality diagrams and powerpoint presentations
+ - PNG - a Portable Networks Graphics image
For
+ low quality diagrams and powerpoint presentations
- - EPS - an Encapsulated Postscript Document
- For high quality diagrams and publications.
- - SVG - a Scalable Vector Graphics document
- For high quality diagrams in publications and on the web.
+ - EPS - an Encapsulated Postscript Document
For
+ high quality diagrams and publications.
+ - SVG - a Scalable Vector Graphics document
For
+ high quality diagrams in publications and on the web.
- BioJS MSA - A JavaScript based multiple sequence alignment
viewer.
For interactive alignment data
visualisation in a web browser.
Get more info about the
- BioJS MSA viewer at a
- href="http://msa.biojs.net/">http://msa.biojs.net/
+ BioJS MSA viewer at http://msa.biojs.net/
@@ -56,51 +54,37 @@
Exporting alignments as Web Pages
-
In Jalview 2.9, new HTML exporting options were introduced. The
standard HTML export option displays alignments as SVG documents
- embedded as scollable panes. Exported pages can optionally also
+ embedded as scrollable panes. Exported pages can optionally also
include BioJSON data,
which allows Jalview to extract the original data used to create the
page. Jalview can also generate HTML pages which embed BioJSON data
and the BioJS MSA viewer, a pure javascript alignment viewer that
- provides a range of interactive analysis capabiltiies.
+ provides a range of interactive analysis capabilities.
-
- Import of BioJSON data from HTML pages
+ Tips for working with EPS Files
+
+ - The EPS file generated by Jalview contains vector graphics
+ which are directly editable in graphics applications such as Adobe
+ Illustrator.
+ - EPS files can be produced as "Text" or
+ "Lineart". Use "Text" if you want the final
+ document to be MUCH smaller in diskspace and be able to search, edit
+ and select text. Use "Lineart" if you want an exact image
+ of the alignment as displayed in Jalview. This is useful if a 3rd
+ Party EPS viewer does not have the same Font which the EPS file was
+ created with.
+ - When importing an EPS file into a Microsoft office document,
+ a snapshot image of the file will be displayed which often looks
+ blurred. Right-click the image and choose "Edit image." to
+ convert it to word drawing objects which give a truer WYSIWIG
+ representation.
+ - Mac OSX users will find that eps files are automatically
+ converted into PDF files.
- When importing embedded data in an HTML document, Jalview
- searches for a hidden input or div element named "seqData":
-
- <div name="seqData" id="seqData" style="display: none;">#valid BioJSON data#</div>
-
- OR
-
- <input type="hidden" id="seqData" name="seqData" value='#valid BioJSON data#'/>
-
- Jalview can also import JSON data directly if it conforms to the BioJSON specification.
-
-Tips for working with EPS Files
-The EPS file generated by Jalview contains vector graphics which are directly
- editable in graphics applications such as Adobe Illustrator.
-EPS files can be produced as "Text" or "Lineart". Use
- "Text" if you want the final document to be MUCH smaller in diskspace
- and be able to search, edit and select text. Use "Lineart" if you
- want an exact image of the alignment as displayed in Jalview. This is useful
- if a 3rd Party EPS viewer does not have the same Font which the EPS file was
- created with.
-When importing an EPS file into a Microsoft office document, a snapshot image of the
- file will be displayed which often looks blurred. Right-click the
- image and choose "Edit image." to convert it to word
- drawing objects which give a truer WYSIWIG representation.
-
-
- Mac OSX users will find that eps files are automatically converted into
- PDF files.
-
-