X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fio%2Fexport.html;h=8a554aa17aacfdc9b922a98ce385df82a63811d1;hb=0fcc08f1f633aa9eae854ebe0c78b5fb75471898;hp=f559c1ad734bbc1e713337f557d826e0ed3e4b5e;hpb=be6b9cfee17a0b002468c997414031694653a70d;p=jalview.git
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+
Exporting alignments as artwork
-Export
-The alignment view can be printed using
-File→Print, or exported in a number of ways via the
-File→Export menu:
-
-- HTML
for viewing in a web browser
-
-- PNG - a Portable Networks Graphics image
For low quality
-diagrams and powerpoint presentations
-
-- EPS - an Encapsulated Postscript Document
For high quality
-diagrams and publications.
-
-
-Tips for working with EPS Files
- The EPS file generated by jalview contains vector
- graphics which are directly editable in graphics applications such as
- Adobe Illustrator.
-- When importing an EPS into to a Microsoft office document, a snapshot image of the
- file will be displayed which often looks blurred. Right-click the
- image and choose "Edit image." to convert it to word
- drawing objects which give a truer WYSIWIG representation.
-
- -
- Mac OSX users will find that eps files are automatically converted into
- PDF files.
-
-
+
+ Exporting alignments as graphics and lineart
+
+
+ The alignment view can be printed using File→Print,
+ or exported in a number of ways via the File→Export
+ menu:
+
+ - HTML
for viewing in a web browser
+
+ - PNG - a Portable Networks Graphics image
For
+ low quality diagrams and powerpoint presentations
+
+ - EPS - an Encapsulated Postscript Document
For
+ high quality diagrams and publications.
+ - SVG - a Scalable Vector Graphics document
For
+ high quality diagrams in publications and on the web.
+
+ - BioJS MSA - A JavaScript based multiple sequence alignment
+ viewer.
For interactive alignment data
+ visualisation in a web browser.
Get more info about the
+ BioJS MSA viewer at http://msa.biojs.net/
+
+
+
+
+
+
+ Exporting alignments as Web Pages
+
+ In Jalview 2.9, new HTML exporting options were introduced. The
+ standard HTML export option displays alignments as SVG documents
+ embedded as scrollable panes. Exported pages can optionally also
+ include BioJSON data,
+ which allows Jalview to extract the original data used to create the
+ page. Jalview can also generate HTML pages which embed BioJSON data
+ and the BioJS MSA viewer, a pure javascript alignment viewer that
+ provides a range of interactive analysis capabilities.
+
+
+
+ Tips for working with EPS Files
+
+ - The EPS file generated by Jalview contains vector graphics
+ which are directly editable in graphics applications such as Adobe
+ Illustrator.
+ - EPS files can be produced as "Text" or
+ "Lineart". Use "Text" if you want the final
+ document to be MUCH smaller in diskspace and be able to search, edit
+ and select text. Use "Lineart" if you want an exact image
+ of the alignment as displayed in Jalview. This is useful if a 3rd
+ Party EPS viewer does not have the same Font which the EPS file was
+ created with.
+ - When importing an EPS file into a Microsoft office document,
+ a snapshot image of the file will be displayed which often looks
+ blurred. Right-click the image and choose "Edit image." to
+ convert it to word drawing objects which give a truer WYSIWIG
+ representation.
+ - Mac OSX users will find that eps files are automatically
+ converted into PDF files.
+