X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fio%2Ffileformats.html;h=6017d4b4ca0225bdf57309be1844d836390dad9a;hb=2273eba5668e5340354da60fed329c6c716cc439;hp=35fe675485dbe69266e9ffc8e230d87970c256dc;hpb=e5cbd35e13f46ae1d59a08b0af1086677418141d;p=jalview.git
diff --git a/help/html/io/fileformats.html b/help/html/io/fileformats.html
index 35fe675..6017d4b 100755
--- a/help/html/io/fileformats.html
+++ b/help/html/io/fileformats.html
@@ -31,7 +31,7 @@ td {
-Alignment Fileformats
+
Alignment File Formats
Jalview understands a wide range of sequence alignment formats. In
order to determine which format has been used for an alignment,
jalview tries to detect some text or formatting unique to one of the formats:
@@ -43,7 +43,7 @@ jalview tries to detect some text or formatting unique to one of the formats:
| FASTA |
>SequenceName
-THISISASEQENCE
|
+THISISASEQUENCE
.fa, .fasta |
| MSF |
!! AA_MULTIPLE_ALIGNMENT 1.0
@@ -64,13 +64,18 @@ THISISASEQENCE
|
>Seq2
.blc |
| PFAM |
-SequenceName THISISASEQENCE |
+SequenceName THISISASEQUENCE |
.pfam |
| Stockholm |
# STOCKHOLM VersionNumber
...
// |
.stk, .sto |
+
+| Phylip |
+Line starts with two numbers separated by white space
+...
// |
+.phy |
The file extensions are used to associate jalview alignment icons