X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fio%2Findex.html;h=063f32962db55fcc2b8172c43fb807a4e74db040;hb=f7fd2fcf425c4a599dbb1440678672eb31cd865a;hp=332cdca3d44614256770aca9f3c6f6bc5dd3b195;hpb=ba048bdd71d38ad45b484e7ff4c3f8b65d34c6ee;p=jalview.git

diff --git a/help/html/io/index.html b/help/html/io/index.html
index 332cdca..063f329 100755
--- a/help/html/io/index.html
+++ b/help/html/io/index.html
@@ -28,6 +28,11 @@ containing the problem file to jalview@jalview.org.
 <p>Each alignment, whether it is the original or an edited version may be saved
   in the standard formats using <strong>File&#8594;Save As</strong></p>
 <p><em>Fasta (Pearson), GCG-MSF, ALN/ClustalW, AMPS Block file, NBRF/PIR, Pfam/Stockholm</em></p>
+Jalview will by default append the sequence start and end to each sequence name, 
+in the format /start-end. If you do not want this behaviour for a particular file 
+output, open the &quot;Output&quot; tab on the Preferences window where you can 
+select which file formats you want to append the start and end sequence positions 
+for. 
 <p>You can also save the current set of alignments and their colours, annotations and
 trees in a Jalview archive file using <strong>Desktop&#8594;Save project</strong>. </p>
 <p>&nbsp;</p>