X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fio%2Fmodellerpir.html;h=0f57053c59862e73a04de7873a6bd986204d6157;hb=ad15cff29620f960119f80176f1fd443da9f6763;hp=942b081cdb1f31a8b11d61f6d110f8c6d639a19d;hpb=b5ec796a35b61f20a22c999426f1c427c23103ef;p=jalview.git

diff --git a/help/html/io/modellerpir.html b/help/html/io/modellerpir.html
index 942b081..0f57053 100755
--- a/help/html/io/modellerpir.html
+++ b/help/html/io/modellerpir.html
@@ -1,4 +1,24 @@
 <html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
 <head>
 <title>Modeller PIR Format IO</title>
 </head>
@@ -25,7 +45,7 @@ Modeller/PIR format, in order to extract the sequence start and end
 numbering and (possibly) a PDB file reference. The description line
 information is always stored in the sequence description string - so
 no information is lost if this parsing process fails.</p>
-<p>The 'Modeller Output' flag in the 'Output' tab of the Jalview <a href="preferences.html">Preferences dialog
+<p>The 'Modeller Output' flag in the 'Output' tab of the Jalview <a href="../features/preferences.html">Preferences dialog
 box</a> controls whether Jalview will also output MODELLER style PIR
 files. In this case, any existing 'non-modeller PIR' header
 information in the description string of an alignment is appended to
