X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fio%2Fmodellerpir.html;h=d6157fb316293a57b8b494de97340a8b35c28f66;hb=44db4288c5102d925c67e5b15ff80dc5e8c27b41;hp=02907214a05a114ce7e29c8f649b0111d0dab076;hpb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;p=jalview.git

diff --git a/help/html/io/modellerpir.html b/help/html/io/modellerpir.html
index 0290721..d6157fb 100755
--- a/help/html/io/modellerpir.html
+++ b/help/html/io/modellerpir.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -28,11 +28,10 @@
   </p>
   <p>
     The homology modelling program, <a
-      href="http://salilab.org/modeller/"
-    >Modeller</a> uses a special form of the PIR format where information
-    about sequence numbering and chain codes are written into the
-    'description' line between the PIR protein tag and the protein
-    alignment entry:
+      href="http://salilab.org/modeller/">Modeller</a> uses a
+    special form of the PIR format where information about sequence
+    numbering and chain codes are written into the 'description' line
+    between the PIR protein tag and the protein alignment entry:
   </p>
   <pre>&gt;P1;Q93Z60_ARATH
 sequence:Q93Z60_ARATH:1:.:118:.:.
@@ -52,12 +51,12 @@ KDPLPDAEDWDGVKGKLQHLE*
     no information is lost if this parsing process fails.</p>
   <p>
     The 'Modeller Output' flag in the 'Output' tab of the Jalview <a
-      href="../features/preferences.html"
-    >Preferences dialog box</a> controls whether Jalview will also output
-    MODELLER style PIR files. In this case, any existing 'non-modeller
-    PIR' header information in the description string of an alignment is
-    appended to an automatically generated modeller description line for
-    that sequence.
+      href="../features/preferences.html">Preferences dialog
+      box</a> controls whether Jalview will also output MODELLER style PIR
+    files. In this case, any existing 'non-modeller PIR' header
+    information in the description string of an alignment is appended to
+    an automatically generated modeller description line for that
+    sequence.
   </p>
   <p>The general format used for generating the Modeller/PIR
     sequence description line is shown below :
