T-COFFEE Annotation Scores

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fio%2Ftcoffeescores.html;h=e67e3afeb2afa39ef3ebb4461ed743b2024fe297;hb=383fd91269f510b189450fbe174e9c051103c7eb;hp=15882eaa347f8b6d8c0b8908faf13cfae8eb9f86;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/help/html/io/tcoffeescores.html b/help/html/io/tcoffeescores.html index 15882ea..e67e3af 100644 --- a/help/html/io/tcoffeescores.html +++ b/help/html/io/tcoffeescores.html @@ -23,14 +23,24 @@ T-COFFEE Annotation Scores -

Loading and viewing T-COFFEE Annotation Scores

T-COFFEE score files like the one below can be displayed on the alignment using the Colours→T-COFFEE Scores -or Colour → Colour by Annotation options.

Example T-COFFEE Score file
-T-COFFEE score files like the one below can be dropped directly onto the corresponding alignment to visualize alignment confidence scores. -

+  
+    Loading and viewing T-COFFEE Annotation Scores
+  
+  
+    T-COFFEE score files like the one below can
+    be displayed on the alignment using the Colours→T-COFFEE
+        Scores or Colour → Colour
+          by Annotation options.
+  
+  
+  
+    Example T-COFFEE Score file

+    T-COFFEE score files like the one below can be dropped directly onto
+    the corresponding alignment to visualize alignment confidence
+    scores.
+  
+   T-COFFEE, Version_9.02.r1228 (2012-02-16 18:15:12 - Revision 1228 - Build 336)
 Cedric Notredame 
 CPU TIME:0 sec.
@@ -69,6 +79,20 @@ cons   999999999999999999999999999851000110321100001134
 1QCF   ----------6878742356789999999999889
 cons   00100000006877641356789999999999889
 
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+Score 0 1 2 3 4 5 6 7 8 9
RGB colour 102, 102, 255 0, 255, 0 102, 255, 0 204, 255, 0 255, 255, 0 255, 204, 0 255, 153, 0 255, 102, 0 255, 51, 0 255, 34, 0