X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fio%2Ftcoffeescores.html;h=e67e3afeb2afa39ef3ebb4461ed743b2024fe297;hb=842713f26c299ec867320918a721ff5be9df7dbb;hp=15882eaa347f8b6d8c0b8908faf13cfae8eb9f86;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/help/html/io/tcoffeescores.html b/help/html/io/tcoffeescores.html index 15882ea..e67e3af 100644 --- a/help/html/io/tcoffeescores.html +++ b/help/html/io/tcoffeescores.html @@ -23,14 +23,24 @@
Loading and viewing T-COFFEE Annotation Scores
-T-COFFEE score files like the one below can be displayed on the alignment using the Colours→T-COFFEE Scores -or Colour → Colour by Annotation options.
- -Example T-COFFEE Score file
-T-COFFEE score files like the one below can be dropped directly onto the corresponding alignment to visualize alignment confidence scores.
-
++ Loading and viewing T-COFFEE Annotation Scores +
++ T-COFFEE score files like the one below can + be displayed on the alignment using the Colours→T-COFFEE + Scores or Colour → Colour + by Annotation options. +
+ ++ Example T-COFFEE Score file
+
+ T-COFFEE score files like the one below can be dropped directly onto + the corresponding alignment to visualize alignment confidence + scores. +T-COFFEE, Version_9.02.r1228 (2012-02-16 18:15:12 - Revision 1228 - Build 336) Cedric Notredame CPU TIME:0 sec. @@ -69,6 +79,20 @@ cons 999999999999999999999999999851000110321100001134 1QCF ----------6878742356789999999999889 cons 00100000006877641356789999999999889- +
Score | 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 |
---|---|---|---|---|---|---|---|---|---|---|
RGB colour | +102, 102, 255 | +0, 255, 0 | +102, 255, 0 | +204, 255, 0 | +255, 255, 0 | +255, 204, 0 | +255, 153, 0 | +255, 102, 0 | +255, 51, 0 | +255, 34, 0 |