X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fkeys.html;h=4ecce1d4eec1ef318d05c833f5993ccffd94e9a9;hb=aff93619ba53584f9b01970832558331951d9dbf;hp=61c55cc145d4c2ea2035f4d7297e1008458dd77f;hpb=c16d6b192b294503d2bd16294454cfe136426e7d;p=jalview.git diff --git a/help/html/keys.html b/help/html/keys.html index 61c55cc..4ecce1d 100755 --- a/help/html/keys.html +++ b/help/html/keys.html @@ -1,242 +1,247 @@ - -
Key Strokes
--Jalview has two distinct modes of keyboard operation - in 'Normal' - mode, single keystrokes (including those shown next to menu items) - provide short cuts to common commands. In 'Cursor' mode (enabled by - F2), some of these are disabled and more complex 'Compound - Keystrokes' can be entered to perform precise navigation, selection - and editing operations. -
-Key | -Which Mode | -Action | -
Escape | -Normal | -Clears the current selection region, highlighted columns and highlghted - residues. | -
Escape | -Cursor | -As in normal mode, but also cancels any partially entered commands | -
F1 | -Both | -Show Help Documentation | -
F2 | -- | Toggle Cursor mode on / off | -
Control 'Z' | -Both | -Undoes the last sequence edit | -
Control 'Y' | -Both | -Redo the last sequence edit undone. | -
Up Arrow | -Normal | -Moves selected sequence(s) up the alignment | -
Down Arrow | -Normal | -Moves selected sequence(s) down the alignment. | -
Left Arrow | -Normal | -Slides selected sequence(s) left. Press Alt key to slide in cursor mode | -
Right Arrow | -Normal | -Slides selected sequence(s) right. Press Alt key to slide in cursor mode | -
Cursor Keys - (Arrow Keys) |
- Cursor | -Move cursor around alignment | -
Page Up | -Both | -Scroll up the alignment view | -
Page Down | -Both | -Scroll down the alignment view | -
Control 'A' | -Both | -Selects all sequences in the alignment | -
Control 'I' | -Both | -Invert sequence selection. | -
Control Alt 'I' | -Both | -Invert column selection. | -
Control 'C' | -Both | -Copies the selected region into the clipboard as a Fasta format file - nb. not available in applet, as no clipboard is available |
-
Control 'V' | -Both | - Paste the contents of the clipboard to the current alignment window.
- (Alignment Window->Edit->Paste->Add to this Alignment) nb. if the - paste is from a Jalview alignment, any sequence and alignment annotations - will also be copied over. |
-
Control Shift 'V' | -Both | -Paste the contents of the clipboard to a new alignment window. (Alignment - Window->Edit->Paste->To New Alignment) | -
Control 'X' | -Both | -Cuts the (fully) selected sequences from the alignment. - - | -
Control 'F' | -Both | -Launches the search window | -
H | -Both | -Hides / Reveals selected columns and sequences | -
Control 'H' | -Both | -Hides / Reveals selected columns | -
Shift 'H' | -Both | -Hides / Reveals selected sequences | -
Control 'O' | -Both | -Input new alignment from file | -
Control 'S' | -Both | -Save alignment with current filename and format | -
Control Shift 'S' | -Both | -Save alignment as a new file or with a different format | -
Control 'P' | -Both | -Opens the print dialog box to print the current view | -
Control 'W' | -Both | -Closes the current view or the current alignment | -
Backspace | -Normal | -Delete the currently selected rows or columns from the alignment. | -
Control 'L' | -Left | -Remove columns to left of left-most column marker. | -
Control 'R' | -Both | -Remove columns to right of right-most column marker. | -
Control 'E' | -Both | -Remove gapped columns | -
Control Shift 'E' | -Both | -Remove all gaps | -
Control 'D' | -Both | -Open the 'Remove redundancy' Dialog box. | -
- | Normal | -- |
The compound commands available in the Cursor mode are summarised -below. Single letter commands can be prefixed by digits to specify a repetition -number, and some more complex commands take one or more numeric -parameters (prefixing the command key and separated by commas).
-Compound -Command | Mode | Action (and parameter description) |
0-9 | Cursor | Begin entering a -numeric parameter (p) or repetition number for a cursor movement or edit -command. |
, | Cursor | Separates one or -more numeric parameters (e.g. p1,p2) for a command. |
p1,p2 Return | Cursor | Move cursor to a particular column (p1) and row (p2) in the alignment. e.g. '5,6<Return>' moves the cursor to the 5th column in the 6th sequence. |
pS | Cursor | Jump to the p'th sequence in the alignment. |
pP | Cursor | Jump to p'th amino acid in current sequence. |
pC | Cursor | Jump to p'th column in the alignment. |
Q | Cursor | Marks the top left corner of the selection area |
M | Cursor | Marks the bottom right corner of the selection area |
[p] Space | Cursor | Inserts
-one (or optionally p) gaps at the current position. Hold down Control or Shift to insert gaps over a sequence group |
[p] Delete | Cursor | Removes
-one (or optionally p) gaps at the cursor position. Hold down Control or Shift to insert gaps over a sequence group |
[p] Backspace | Cursor | Removes
-one (or optionally p) gaps at the cursor position. Hold down Control or Shift to insert gaps over a sequence group |
-
- - + +
Key Strokes
++Jalview has two distinct modes of keyboard operation - in 'Normal' + mode, single keystrokes (including those shown next to menu items) + provide short cuts to common commands. In 'Cursor' mode (enabled by + F2), some of these are disabled and more complex 'Compound + Keystrokes' can be entered to perform precise navigation, selection + and editing operations. +
+Key | +Which Mode | +Action | +
Escape | +Normal | +Clears the current selection region, highlighted columns and highlghted + residues. | +
Escape | +Cursor | +As in normal mode, but also cancels any partially entered commands | +
F1 | +Both | +Show Help Documentation | +
F2 | ++ | Toggle Cursor mode on / off | +
Control 'Z' | +Both | +Undoes the last sequence edit | +
Control 'Y' | +Both | +Redo the last sequence edit undone. | +
Up Arrow | +Normal | +Moves selected sequence(s) up the alignment | +
Down Arrow | +Normal | +Moves selected sequence(s) down the alignment. | +
Left Arrow | +Normal | +Slides selected sequence(s) left. Press Alt key to slide in cursor mode | +
Right Arrow | +Normal | +Slides selected sequence(s) right. Press Alt key to slide in cursor mode | +
Cursor Keys + (Arrow Keys) |
+ Cursor | +Move cursor around alignment | +
Page Up | +Both | +Scroll up the alignment view | +
Page Down | +Both | +Scroll down the alignment view | +
Control 'A' | +Both | +Selects all sequences in the alignment | +
Control 'I' | +Both | +Invert sequence selection. | +
Control Alt 'I' | +Both | +Invert column selection. | +
Control 'C' | +Both | +Copies the selected region into the clipboard as a Fasta format file + nb. not available in applet, as no clipboard is available |
+
Control 'V' | +Both | + Paste the contents of the clipboard to the current alignment window.
+ (Alignment Window->Edit->Paste->Add to this Alignment) nb. if the + paste is from a Jalview alignment, any sequence and alignment annotations + will also be copied over. |
+
Control Shift 'V' | +Both | +Paste the contents of the clipboard to a new alignment window. (Alignment + Window->Edit->Paste->To New Alignment) | +
Control 'X' | +Both | +Cuts the (fully) selected sequences from the alignment. + + | +
Control 'F' | +Both | +Launches the search window | +
H | +Both | +Hides / Reveals selected columns and sequences | +
Control 'H' | +Both | +Hides / Reveals selected columns | +
Shift 'H' | +Both | +Hides / Reveals selected sequences | +
Control + Shift 'H' | +Both | +Hides everything but the current selection | +
Control 'O' | +Both | +Input new alignment from file | +
Control 'S' | +Both | +Save alignment with current filename and format | +
Control Shift 'S' | +Both | +Save alignment as a new file or with a different format | +
Control 'P' | +Both | +Opens the print dialog box to print the current view | +
Control 'W' | +Both | +Closes the current view or the current alignment | +
Backspace | +Normal | +Delete the currently selected rows or columns from the alignment. | +
Control 'L' | +Left | +Remove columns to left of left-most column marker. | +
Control 'R' | +Both | +Remove columns to right of right-most column marker. | +
Control 'E' | +Both | +Remove gapped columns | +
Control Shift 'E' | +Both | +Remove all gaps | +
Control 'D' | +Both | +Open the 'Remove redundancy' Dialog box. | +
+ | Normal | ++ |
The compound commands available in the Cursor mode are summarised +below. Single letter commands can be prefixed by digits to specify a repetition +number, and some more complex commands take one or more numeric +parameters (prefixing the command key and separated by commas).
+Compound +Command | Mode | Action (and parameter description) |
0-9 | Cursor | Begin entering a +numeric parameter (p) or repetition number for a cursor movement or edit +command. |
, | Cursor | Separates one or +more numeric parameters (e.g. p1,p2) for a command. |
p1,p2 Return | Cursor | Move cursor to a particular column (p1) and row (p2) in the alignment. e.g. '5,6<Return>' moves the cursor to the 5th column in the 6th sequence. |
pS | Cursor | Jump to the p'th sequence in the alignment. |
pP | Cursor | Jump to p'th amino acid in current sequence. |
pC | Cursor | Jump to p'th column in the alignment. |
Q | Cursor | Marks the top left corner of the selection area |
M | Cursor | Marks the bottom right corner of the selection area |
[p] Space | Cursor | Inserts
+one (or optionally p) gaps at the current position. Hold down Control or Shift to insert gaps over a sequence group |
[p] Delete | Cursor | Removes
+one (or optionally p) gaps at the cursor position. Hold down Control or Shift to insert gaps over a sequence group |
[p] Backspace | Cursor | Removes
+one (or optionally p) gaps at the cursor position. Hold down Control or Shift to insert gaps over a sequence group |
+
+ +