X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FalignmentMenu.html;fp=help%2Fhtml%2Fmenus%2FalignmentMenu.html;h=95dcad838c9f562f3ef5ab4a38a7c69b439c21f1;hb=cb56d532a3b7cc50d724b0761cc7c49ed2d081cd;hp=f67faa969963e1f89863a931a18683f5e6761802;hpb=e34a708f67ff7496cb76c66a3d7b6f8e47518c02;p=jalview.git

diff --git a/help/html/menus/alignmentMenu.html b/help/html/menus/alignmentMenu.html
index f67faa9..95dcad8 100755
--- a/help/html/menus/alignmentMenu.html
+++ b/help/html/menus/alignmentMenu.html
@@ -62,18 +62,16 @@
 						Select the format of the text by selecting one of the following
 						menu items.</em>
 					<ul>
-						<li><strong>FASTA</strong> <em></em>
-						</li>
-						<li><strong>MSF</strong>
-						</li>
-						<li><strong>CLUSTAL</strong>
-						</li>
-						<li><strong>BLC</strong>
-						</li>
-						<li><strong>PIR</strong>
-						</li>
-						<li><strong>PFAM</strong>
-						</li>
+						<li><strong>FASTA</strong> </li>
+						<li><strong>MSF</strong></li>
+						<li><strong>CLUSTAL</strong></li>
+						<li><strong>BLC</strong></li>
+						<li><strong>PIR</strong></li>
+						<li><strong>PFAM</strong></li>
+						<li><strong>PileUp</strong></li>
+						<li><strong>AMSA</strong></li>
+						<li><strong>STH</strong></li>
+						<li><strong>Phylip</strong></li>
 					</ul></li>
 				<li><strong>Print (Control P)<br> </strong><em>Jalview
 						will print the alignment using the current fonts and colours of
@@ -203,9 +201,9 @@
 						the last redundancy deletion.</em>
 				</li>
 				<li><strong>Pad Gaps<br> </strong><em>When selected,
-						the alignment will be kept at minimal width (so there no empty
+						the alignment will be kept at minimal width (so there are no empty
 						columns before or after the first or last aligned residue) and all
-						sequences will be padded with gap characters to the before and
+						sequences will be padded with gap characters before and
 						after their terminating residues.<br> This switch is useful
 						when making a tree using unaligned sequences and when working with
 						alignment analysis programs which require 'properly aligned