X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FalignmentMenu.html;h=51ad601f62ec5b88456f49770ed66feb8e81971c;hb=bf3206cc56a3bff812f96967a81cc9cff54a57b1;hp=c8b2270d685a9d8c1f79904818397452f96827fc;hpb=dde303bc73617ab4eb3e681e67cf899e6a971318;p=jalview.git
diff --git a/help/html/menus/alignmentMenu.html b/help/html/menus/alignmentMenu.html
index c8b2270..51ad601 100755
--- a/help/html/menus/alignmentMenu.html
+++ b/help/html/menus/alignmentMenu.html
@@ -278,6 +278,12 @@
Columns by Annotation
Select or Hide
columns in the alignment according to secondary structure,
labels and values shown in alignment annotation rows.
+
Select Highlighted Columns
Selects
+ the columns currently highlighted as a result of a find, mouse
+ over, or selection event from a linked structure viewer or other
+ application. Modifiers will work on some platforms: ALT will add
+ all but the highlighted set to the column selection, and CTRL
+ (or META) will toggle the selection.
View
@@ -632,22 +638,22 @@
- JPred Secondary Structure Prediction
Secondary structure prediction by network
- consensus. See the Jpred3
+ consensus. See the Jpred
client entry for more information. The behaviour of this
calculation depends on the current selection:
- If nothing is selected, and the displayed
- sequences appear to be aligned, then a JNet prediction
+ sequences appear to be aligned, then a JPred prediction
will be run for the first sequence in the alignment,
using the current alignment. Otherwise the first
sequence will be submitted for prediction.
- If just one sequence (or a region on one
sequence) has been selected, it will be submitted to
- the automatic JNet prediction server for homolog
+ the automatic JPred prediction server for homolog
detection and prediction.
- If a set of sequences are selected, and they
appear to be aligned, then the alignment will be used
- for a Jnet prediction on the first
+ for a JPred prediction on the first
sequence in the set (that is, the one that appears
first in the alignment window).