X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FalignmentMenu.html;h=9ec5adc80fbcdd5740a60517204f5977f5cec06b;hb=0f8e8fef1abe7837642706ee5b5f97d3e1eda9db;hp=4a1a200377de05d2c1849d08be7d1aace67497f3;hpb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;p=jalview.git

diff --git a/help/html/menus/alignmentMenu.html b/help/html/menus/alignmentMenu.html
index 4a1a200..9ec5adc 100755
--- a/help/html/menus/alignmentMenu.html
+++ b/help/html/menus/alignmentMenu.html
@@ -1,14 +1,14 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -287,9 +287,13 @@
 						<li><strong>Show Consensus Histogram<br> </strong><em>
 							Enable or disable the display of the histogram above the
 							consensus sequence.</em></li>
-						<li><strong>Show Consensus Profile<br> </strong><em> Enable
-							or disable the display of the sequence logo above the consensus
+						<li><strong>Show Consensus Logo<br> </strong><em> Enable
+							or disable the display of the Consensus Logo above the consensus
 							sequence.</em></li>
+						<li><strong>Normalise Consensus Logo<br>
+						</strong><em>When enabled, scales all logo stacks to the same height,
+								making it easier to compare symbol diversity in highly variable
+								regions.</em></li>
 						<li><strong>Group Conservation<br> </strong><em> When
 							ticked, display a conservation row for all groups (only available
 							for protein alignments).</em></li>
