X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FalignmentMenu.html;h=aceabce6cff415f41d403479174de80961e2d074;hb=aff93619ba53584f9b01970832558331951d9dbf;hp=b3682357451635911f443402b2b211a6a03d6f1d;hpb=c16d6b192b294503d2bd16294454cfe136426e7d;p=jalview.git diff --git a/help/html/menus/alignmentMenu.html b/help/html/menus/alignmentMenu.html index b368235..aceabce 100755 --- a/help/html/menus/alignmentMenu.html +++ b/help/html/menus/alignmentMenu.html @@ -193,6 +193,12 @@
  • Undefine Groups (Control U)
    The alignment will be reset with no defined groups.
    WARNING: This cannot be undone.
    • +
  • Make Groups
     + The currently selected groups of the alignment will be + subdivided according to the contents of the currently selected region. +
    Use this to subdivide an alignment based on the + different combinations of residues observed at specific + positions. (new in jalview 2.5)
  • View @@ -205,10 +211,10 @@
  • Gather Views (G)
    Each view associated with the alignment will be displayed within its own tab on the current alignment window.
    • -
  • Show→(all Columns / Sequences)
    - All hidden Columns / Sequences will be revealed.
    • -
  • Hide→(all Columns / Sequences)
    - Hides the all the currently selected Columns / Sequences
    • +
  • Show→(all Columns / Sequences / Sequences and Columns)
    + All hidden Columns / Sequences / Sequences and Columns will be revealed.
    • +
  • Hide→(all Columns / Sequences / Selected Region / All but Selected Region )
    + Hides the all the currently selected Columns / Sequences / Region or everything but the selected Region.
  • Show Annotations
    If this is selected the "Annotation Panel" will be displayed below the alignment. The default setting is to display the