X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FalignmentMenu.html;h=b3682357451635911f443402b2b211a6a03d6f1d;hb=3e0eb5fe92f38828607594c7b70dfdf012e4d3dc;hp=d2ca48190c5e066a94100e4e009f8f34e7896cfc;hpb=c554d41a4effc6719895bda6b3abc04c032715a8;p=jalview.git

diff --git a/help/html/menus/alignmentMenu.html b/help/html/menus/alignmentMenu.html
index d2ca481..b368235 100755
--- a/help/html/menus/alignmentMenu.html
+++ b/help/html/menus/alignmentMenu.html
@@ -214,6 +214,11 @@
 		displayed below the alignment. The default setting is to display the
 		conservation calculation, quality calculation and consensus values as
 		bar charts. </em></li>
+		  <li><strong>Automatic Scrolling<br>
+    </strong><em>When selected, the view will automatically scroll to display the
+    highlighted sequence position corresponding to the position under the mouse 
+    pointer in a linked alignment or structure view.</em>
+		</li>
 		<li><strong>Show Sequence Features</strong><br>
 		<em>Show or hide sequence features on this alignment.</em></li>
 		<li><strong><a href="../features/featuresettings.html">Seqence
@@ -221,6 +226,11 @@
 		<em>Opens the Sequence Feature Settings dialog box to control the
 		colour and display of sequence features on the alignment, and
 		configure and retrieve features from DAS annotation servers.</em></li>
+		<li><strong>Sequence ID Tooltip</strong><em> (application only)
+    <br>This submenu's options allow the inclusion or exclusion of 
+    non-positional sequence features or database cross references 
+    from the tooltip shown when the mouse hovers over the sequence ID panel.</em></li> 
+		
 		<li><strong><a href="../features/overview.html">Overview
 		Window</a><br>
 		</strong><em>A scaled version of the alignment will be displayed in a