X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwannotations.html;h=546a94a943bcaeb086b5c689191479431b28b85c;hb=1698842ec6755d1995dae7c1a590efbfc8f6e4d5;hp=e8a64f6401ea5d306890cced0c3b0278f3a62db2;hpb=8e01fb5c8703be31f7f4f42b8db3d1e99e20cddc;p=jalview.git

diff --git a/help/html/menus/alwannotations.html b/help/html/menus/alwannotations.html
index e8a64f6..546a94a 100755
--- a/help/html/menus/alwannotations.html
+++ b/help/html/menus/alwannotations.html
@@ -20,15 +20,18 @@
         up the menu.</em> </li>
       <li><strong>Show All Hidden Rows</strong><br>
         <em>Shows all hidden annotation rows.</em> </li>
-      <li><strong>Show Values in Text Box</strong><br>
-        <em>Opens a text box with a list of comma-separated values corresponding 
-        to the annotation (numerical or otherwise) at each position in the row. 
-        This is useful to export alignment quality measurements for further analysis.</em> 
-      </li>
+      <li><strong>Export Annotation</strong><br>
+        <em>Annotations can be saved to file or output to a text window in the 
+        Jalview annotations format. </em> </li>
       <li><strong>Ignore Gaps in Consensus</strong><br>
-        If this checkbox is selected, all consensus calculations performed in the 
-        current Alignment window will be done without counting gaps as
-        a consensus character.</li>
+        If this checkbox is selected, all consensus calculations performed in 
+        the current Alignment window will be done without counting gaps as a consensus 
+        character.</li>
+      <li><strong>Copy Consensus Sequence</strong><br>
+        Copies the consensus sequence to the clipboard in Fasta format, to allow 
+        the consensus sequence to be added to an alignment. Note the copied sequence 
+        is not accessible to other programs if Jalview is running as an applet 
+        in a web page.</li>
     </ul>
   </li>
   <li><strong>Annotation Popup Menu<br>