X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwannotations.html;h=546a94a943bcaeb086b5c689191479431b28b85c;hb=4fe43371b9524afd658c97c8767cf7e6dc84459e;hp=e8a64f6401ea5d306890cced0c3b0278f3a62db2;hpb=8e01fb5c8703be31f7f4f42b8db3d1e99e20cddc;p=jalview.git
diff --git a/help/html/menus/alwannotations.html b/help/html/menus/alwannotations.html
index e8a64f6..546a94a 100755
--- a/help/html/menus/alwannotations.html
+++ b/help/html/menus/alwannotations.html
@@ -20,15 +20,18 @@
up the menu.
Show All Hidden Rows
Shows all hidden annotation rows.
- Show Values in Text Box
- Opens a text box with a list of comma-separated values corresponding
- to the annotation (numerical or otherwise) at each position in the row.
- This is useful to export alignment quality measurements for further analysis.
-
+ Export Annotation
+ Annotations can be saved to file or output to a text window in the
+ Jalview annotations format.
Ignore Gaps in Consensus
- If this checkbox is selected, all consensus calculations performed in the
- current Alignment window will be done without counting gaps as
- a consensus character.
+ If this checkbox is selected, all consensus calculations performed in
+ the current Alignment window will be done without counting gaps as a consensus
+ character.
+ Copy Consensus Sequence
+ Copies the consensus sequence to the clipboard in Fasta format, to allow
+ the consensus sequence to be added to an alignment. Note the copied sequence
+ is not accessible to other programs if Jalview is running as an applet
+ in a web page.
Annotation Popup Menu