X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwannotations.html;h=546a94a943bcaeb086b5c689191479431b28b85c;hb=9c1a0325b6cd763f212f838f4a2998c38b052490;hp=d9540f9507b3b2c26ca78791c4ec698ff73d8797;hpb=a82d3b44ffe6864025e158c942f89c90f5458838;p=jalview.git

diff --git a/help/html/menus/alwannotations.html b/help/html/menus/alwannotations.html
index d9540f9..546a94a 100755
--- a/help/html/menus/alwannotations.html
+++ b/help/html/menus/alwannotations.html
@@ -24,9 +24,14 @@
         <em>Annotations can be saved to file or output to a text window in the 
         Jalview annotations format. </em> </li>
       <li><strong>Ignore Gaps in Consensus</strong><br>
-        If this checkbox is selected, all consensus calculations performed in the 
-        current Alignment window will be done without counting gaps as
-        a consensus character.</li>
+        If this checkbox is selected, all consensus calculations performed in 
+        the current Alignment window will be done without counting gaps as a consensus 
+        character.</li>
+      <li><strong>Copy Consensus Sequence</strong><br>
+        Copies the consensus sequence to the clipboard in Fasta format, to allow 
+        the consensus sequence to be added to an alignment. Note the copied sequence 
+        is not accessible to other programs if Jalview is running as an applet 
+        in a web page.</li>
     </ul>
   </li>
   <li><strong>Annotation Popup Menu<br>