X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwcolour.html;h=2ad79d591cea6b658056894c280d5dfe08843d8f;hb=b8810711642d8473325c8a3d3e76cc5c3c9b5bbd;hp=3093edd2c6fc3822f16f3e0f70168ed824b1633e;hpb=a45774ee31d9f35d4eff46d54d7deab719afb092;p=jalview.git
diff --git a/help/html/menus/alwcolour.html b/help/html/menus/alwcolour.html
index 3093edd..2ad79d5 100755
--- a/help/html/menus/alwcolour.html
+++ b/help/html/menus/alwcolour.html
@@ -1,21 +1,24 @@
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
Alignment Window Menus
@@ -31,7 +34,7 @@
Colour Scheme options: None, ClustalX, Blosum62 Score, Percentage
Identity, Zappo, Taylor, Hydrophobicity, Helix Propensity, Strand Propensity,
- Turn Propensity, Buried Index, Nucleotide, User Defined
+ Turn Propensity, Buried Index, Nucleotide, Purine/Pyrimidine, User Defined
See colours for
a description of all colour schemes.
@@ -56,6 +59,11 @@
Colours the alignment on a per-column value from a specified annotation.
See Annotation Colouring.
+ By RNA Helices
+ Colours the helices of an RNA alignment loaded from a Stockholm file. See
+ RNA Helices
+ Colouring.
+