X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwcolour.html;h=41c8a1587a4cb90b5543a4948a3c07e9f6751d70;hb=a8f483d04205bb8273ee311c12968b7e86d205fa;hp=f00487f1f17168c6c2b22535333e178fa9fd9d29;hpb=c53aeee9a688f68d64106a968876e542f701fbc6;p=jalview.git

diff --git a/help/html/menus/alwcolour.html b/help/html/menus/alwcolour.html
index f00487f..41c8a15 100755
--- a/help/html/menus/alwcolour.html
+++ b/help/html/menus/alwcolour.html
@@ -1,20 +1,21 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
 -->
 <head><title>Alignment Window Menus</title></head>
 
@@ -31,7 +32,7 @@
       </em></li>
     <li>Colour Scheme options: <strong>None, ClustalX, Blosum62 Score, Percentage 
       Identity, Zappo, Taylor, Hydrophobicity, Helix Propensity, Strand Propensity, 
-      Turn Propensity, Buried Index, Nucleotide, User Defined<br>
+      Turn Propensity, Buried Index, Nucleotide, Purine/Pyrimidine, User Defined<br>
       </strong> <em>See <a href="../colourSchemes/index.html">colours</a> for 
       a description of all colour schemes.</em><br>
     </li>
@@ -56,6 +57,11 @@
       <em>Colours the alignment on a per-column value from a specified annotation. 
       See <a href="../colourSchemes/annotationColouring.html">Annotation Colouring</a>.</em><br>
     </li>
+    <li><strong>By RNA Helices</strong><br>
+		<em>Colours the helices of an RNA alignment loaded from a Stockholm file. See 
+		<a href="../colourSchemes/rnahelicesColouring.html">RNA Helices
+		Colouring</a>.</em><br>
+		</li>
   </ul>
 </body>
 </html>
