X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwcolour.html;h=4c295add197f524270915c0597e1c9b9318e3727;hb=8dbb48ad299320b71e3d59eb79a8634f97aff6bb;hp=1a7d59c8ce0fea077c7c6e4fc9bad5fa4b2492e1;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git
diff --git a/help/html/menus/alwcolour.html b/help/html/menus/alwcolour.html
index 1a7d59c..4c295ad 100755
--- a/help/html/menus/alwcolour.html
+++ b/help/html/menus/alwcolour.html
@@ -1,21 +1,24 @@
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
Alignment Window Menus
@@ -31,7 +34,7 @@
Colour Scheme options: None, ClustalX, Blosum62 Score, Percentage
Identity, Zappo, Taylor, Hydrophobicity, Helix Propensity, Strand Propensity,
- Turn Propensity, Buried Index, Nucleotide, User Defined
+ Turn Propensity, Buried Index, Nucleotide, Purine/Pyrimidine, User Defined
See colours for
a description of all colour schemes.
@@ -56,6 +59,11 @@
Colours the alignment on a per-column value from a specified annotation.
See Annotation Colouring.
+ By RNA Helices
+ Colours the helices of an RNA alignment loaded from a Stockholm file. See
+ RNA Helices
+ Colouring.
+