X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwcolour.html;h=92e78a0fdf7f9c7b588520e236b46b8a46834d8d;hb=3fd44a9b8f3e44b671ee26be26a8c1d541de3028;hp=f00487f1f17168c6c2b22535333e178fa9fd9d29;hpb=c53aeee9a688f68d64106a968876e542f701fbc6;p=jalview.git
diff --git a/help/html/menus/alwcolour.html b/help/html/menus/alwcolour.html
index f00487f..92e78a0 100755
--- a/help/html/menus/alwcolour.html
+++ b/help/html/menus/alwcolour.html
@@ -1,20 +1,21 @@
Alignment Window Menus
@@ -31,7 +32,7 @@
Colour Scheme options: None, ClustalX, Blosum62 Score, Percentage
Identity, Zappo, Taylor, Hydrophobicity, Helix Propensity, Strand Propensity,
- Turn Propensity, Buried Index, Nucleotide, User Defined
+ Turn Propensity, Buried Index, Nucleotide, Purine/Pyrimidine, User Defined
See colours for
a description of all colour schemes.
@@ -56,6 +57,11 @@
Colours the alignment on a per-column value from a specified annotation.
See Annotation Colouring.
+ By RNA Helices
+ Colours the helices of an RNA alignment loaded from a Stockholm file. See
+ RNA Helices
+ Colouring.
+