X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwcolour.html;h=d0bc0cb89d3d5523137f8d92aee538a406a9d32e;hb=524f1bc53749f18e8217ec14b72d3a2a444c072f;hp=7f4f31718a8cd64f8641bebc40615bc8a4e5ad66;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/help/html/menus/alwcolour.html b/help/html/menus/alwcolour.html
index 7f4f317..d0bc0cb 100755
--- a/help/html/menus/alwcolour.html
+++ b/help/html/menus/alwcolour.html
@@ -1,14 +1,14 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -31,7 +31,7 @@
       </em></li>
     <li>Colour Scheme options: <strong>None, ClustalX, Blosum62 Score, Percentage 
       Identity, Zappo, Taylor, Hydrophobicity, Helix Propensity, Strand Propensity, 
-      Turn Propensity, Buried Index, Nucleotide, User Defined<br>
+      Turn Propensity, Buried Index, Nucleotide, Purine/Pyrimidine, User Defined<br>
       </strong> <em>See <a href="../colourSchemes/index.html">colours</a> for 
       a description of all colour schemes.</em><br>
     </li>
@@ -56,6 +56,11 @@
       <em>Colours the alignment on a per-column value from a specified annotation. 
       See <a href="../colourSchemes/annotationColouring.html">Annotation Colouring</a>.</em><br>
     </li>
+    <li><strong>By RNA Helices</strong><br>
+		<em>Colours the helices of an RNA alignment loaded from a Stockholm file. See 
+		<a href="../colourSchemes/rnahelicesColouring.html">RNA Helices
+		Colouring</a>.</em><br>
+		</li>
   </ul>
 </body>
 </html>
