X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwcolour.html;h=d0bc0cb89d3d5523137f8d92aee538a406a9d32e;hb=7ce72ca7fadf35a249427ecb836b22abb04ab653;hp=eccfae5e0b99ea2b7ae0cdba27a2c52747d276c8;hpb=975e82267a8969335a8119aa9fccf238634a68d0;p=jalview.git diff --git a/help/html/menus/alwcolour.html b/help/html/menus/alwcolour.html index eccfae5..d0bc0cb 100755 --- a/help/html/menus/alwcolour.html +++ b/help/html/menus/alwcolour.html @@ -1,4 +1,21 @@ + Alignment Window Menus @@ -14,7 +31,7 @@
  • Colour Scheme options: None, ClustalX, Blosum62 Score, Percentage Identity, Zappo, Taylor, Hydrophobicity, Helix Propensity, Strand Propensity, - Turn Propensity, Buried Index, Nucleotide, User Defined
    + Turn Propensity, Buried Index, Nucleotide, Purine/Pyrimidine, User Defined
     See colours for a description of all colour schemes.
    • @@ -39,6 +56,11 @@ Colours the alignment on a per-column value from a specified annotation. See Annotation Colouring.
    +
  • By RNA Helices
    + Colours the helices of an RNA alignment loaded from a Stockholm file. See + RNA Helices + Colouring.
    +