X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwcolour.html;h=e62a1304b463e87299b0f9aabb30580603c14058;hb=b1e2aea95b3839a1a53f809c579666075cd3d348;hp=9a7d43b3c556920f5159c044e036d2d1923c63ab;hpb=8c0737632c158907098990b81ac702710721e9f2;p=jalview.git diff --git a/help/html/menus/alwcolour.html b/help/html/menus/alwcolour.html index 9a7d43b..e62a130 100755 --- a/help/html/menus/alwcolour.html +++ b/help/html/menus/alwcolour.html @@ -1,45 +1,76 @@ - -
Alignment Window Colour Menu
--- - + + + +-
-- Apply Colour To All Groups
-
- If this is selected, any changes made to the background colour - will be applied to all currently defined groups.
-- Colour Scheme options: None, ClustalX, Blosum62 Score, Percentage - Identity, Zappo, Taylor, Hydrophobicity, Helix Propensity, Strand Propensity, - Turn Propensity, Buried Index, Nucleotide, User Defined
-
- See colours for - a description of all colour schemes.
-- By Conservation
-
- See Colouring - by Conservation.
-- Modify Conservation Threshold
-
- Use this to display the conservation threshold slider window. - Useful if the window has been closed, or if the 'by conservation' option - appears to be doing nothing!
-- Above Identity Threshold
-
- See Above Percentage - Identity.
-- Modify Identity Threshold
-
- Use this to set the threshold value for colouring above Identity. - Useful if the window has been closed.
-- By Annotation
-
- Colours the alignment on a per-column value from a specified annotation. - See Annotation Colouring.
-
+ Alignment Window Colour Menu +
+