X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwfile.html;h=9d2ad33915f44a82fe31c003dc0d4293449d70de;hb=4609be9dc7b290edf0c2fbcad9e6b6fc7f919d18;hp=d6d62a8ef2166225cdb71f6fc2deaf7dd36fe525;hpb=eb5ebad84307a5c1d99d1728a6a6842a868404d1;p=jalview.git

diff --git a/help/html/menus/alwfile.html b/help/html/menus/alwfile.html
index d6d62a8..9d2ad33 100755
--- a/help/html/menus/alwfile.html
+++ b/help/html/menus/alwfile.html
@@ -1,4 +1,24 @@
 <html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
 <head>
 <title>Alignment Window Menus</title>
 </head>
@@ -8,7 +28,7 @@
 <ul>
 	<li><strong>Fetch Sequence</strong><br>
 	<em>Shows a dialog window in which you can select known ids from
-	Uniprot, EMBL, EMBLCDS or PDB database using Web Services provided by
+	Uniprot, EMBL, EMBLCDS, PDB, PFAM, or RFAM databases using Web Services provided by
 	the European Bioinformatics Institute. See <a
 		href="../features/seqfetch.html">Sequence Fetcher</a></em>.</li>
 	<li><strong>Add Sequences</strong><em><br>
@@ -41,6 +61,10 @@
 		<li><strong>BLC</strong></li>
 		<li><strong>PIR</strong></li>
 		<li><strong>PFAM</strong></li>
+		<li><strong>PileUp</strong></li>
+		<li><strong>AMSA</strong></li>
+		<li><strong>STH</strong></li>
+		<li><strong>Phylip</strong></li>
 	</ul>
 	</li>
 	<li><strong>Page Setup ...</strong><br>
@@ -68,6 +92,8 @@
 		<li><strong>PNG<br>
 		</strong><em>Create a <a href="../io/export.html">Portable Network
 		Graphics</a> file from your alignment.</em></li>
+		<li><strong>SVG<br>
+		</strong><em>Create a <a href="../io/export.html">Scalable Vector Graphics</a> file from your alignment for embedding in web pages.</em></li>
 	</ul>
 	</li>
 	<li><strong>Export Features</strong><em><br>
