X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwfile.html;h=af3e1056a0b2af8b4f82eeec65e280dace080d01;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=eb45924051412e0e0dd737410416b1c474ad1766;hpb=96b6991703b70a1bbb0491f9946d397c9fcf5a38;p=jalview.git diff --git a/help/html/menus/alwfile.html b/help/html/menus/alwfile.html index eb45924..af3e105 100755 --- a/help/html/menus/alwfile.html +++ b/help/html/menus/alwfile.html @@ -1,4 +1,21 @@ + Alignment Window Menus @@ -15,9 +32,10 @@ Add sequences to the visible alignment from file, URL, or cut & paste window
  • Reload
    - Reloads the alignment from the original file, if available.
    Warning: - This will delete any edits, analyses and colourings applied since the - alignment was last saved, and cannot be undone.
    • + Reloads the alignment from the original file, if available.
    + Warning: This will delete any edits, analyses and + colourings applied since the alignment was last saved, and cannot be + undone.
  • Save (Control S)
    Saves the alignment to the file it was loaded from (if available), in the same format, updating the original in place.
    • @@ -26,9 +44,11 @@ open, use the "Files of type:" selection box to determine which alignment format to save as.
  • Output to Textbox
    -     The alignment will be displayed in plain text in a new window + The alignment will be displayed in plain text in a new window, which you can "Copy and Paste" using the pull down menu, or - your standard operating system copy and paste keys.
    + your standard operating system copy and paste keys. The output window + also has a "New Window" button to import the + (possibly edited) text as a new alignment.
    Select the format of the text by selecting one of the following menu items.
    • +
  • Page Setup ...
    + Open the printing system's Page Setup dialog box, to + control page size, layout and orientation.
  • Print (Control P)
    Jalview will print the alignment using the current fonts and colours of your alignment. If the alignment has annotations visible, @@ -47,8 +70,8 @@ the number of residues per line of your alignment will depend on the paper width or your alignment window width, whichever is the smaller.
  • Export Image
    - Creates an alignment graphic with the current view's annotation, alignment - background colours and group colours. If the alignment is wrapped, the output will also be wrapped and will have the same visible residue width as the open alignment.