X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwformat.html;h=7c015db4996a62f5f08241bebe7101ec79c3ee30;hb=f4890a59f71b127d1ffb8077d95996ade6dac761;hp=3a13e023d50400300ab3fccd3242f5e73bad2b10;hpb=5ba0be3c2257b380e292c53d47993b78ece4892d;p=jalview.git

diff --git a/help/html/menus/alwformat.html b/help/html/menus/alwformat.html
index 3a13e02..7c015db 100644
--- a/help/html/menus/alwformat.html
+++ b/help/html/menus/alwformat.html
@@ -1,4 +1,21 @@
 <html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * 
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+-->
 <head>
 <p><strong>Alignment Window Format Menu</strong></p>
 <ul>
@@ -50,6 +67,13 @@
     spaces. <br>
     You may set the default gap character in <a
 		href="../features/preferences.html">preferences</a>.</em></li>
+	<li><strong>Centre Column Labels<br>
+    </strong><em>When this is selected, the text labels within each annotation row will be centred on the column that they are associated with.
+    </em></li>
+    <li><strong>Show Unconserved<br>
+    </strong><em>When this is selected, all consensus sequence symbols will be rendered as a '.', highlighting mutations in highly conserved alignments.
+    </em></li>
+    
 </ul>
 </body>
 </html>
