X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwselect.html;h=07828a3a26238e40ea706adb7e57d175f57a4fb5;hb=2b8c0785318a3528e1876e8e2dd48b7d831eae69;hp=c4b3002fdcf6e5cffcca320c9363c9a1ec3dea93;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git
diff --git a/help/html/menus/alwselect.html b/help/html/menus/alwselect.html
index c4b3002..07828a3 100644
--- a/help/html/menus/alwselect.html
+++ b/help/html/menus/alwselect.html
@@ -1,48 +1,78 @@
-
-Alignment Window Select Menu
-
-
- - Find... (Control F)
- Opens the Find dialog box to search for residues, sequence name or residue
- position within the alignment and create new sequence features from the queries.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
+
+
+
+ Alignment Window Select Menu
+
+
+
+ - Find...
+ (Control F)
Opens the Find dialog box to
+ search for residues, sequence name or residue position within
+ the alignment and create new sequence features from the queries.
- - Select All (Control A)
+ - Select All (Control A)
Selects all the sequences and residues in the alignment.
- Use <CTRL> and A (<APPLE> and A on a MacOSX) to select all.
- - Deselect All (Escape)
- Removes the current selection box (red dashed box) from the
- alignment window. All selected sequences, residues and marked columns
- will be deselected.
- Use <ESCAPE> to deselect all.
- - Invert Sequence Selection (Control I)
- Any sequence ids currently not selected will replace the
- current selection.
- - Invert Column Selection (Control Alt I)
- Any columns currently not selected will replace the current
- column selection.
- - Undefine Groups (Control U)
- The alignment will be reset with no defined groups.
- WARNING: This cannot be undone.
- - Make Groups
- The currently selected groups of the alignment will be subdivided according to the contents of the currently selected region.
Use this to subdivide an alignment based on the different combinations of residues observed at specific positions. (new in jalview 2.5)
-
+ Use <CTRL> and A (<APPLE> and A on a MacOSX) to
+ select all.
+
+ Deselect All (Escape)
+ Removes the current selection box (red dashed box) from the
+ alignment window. All selected sequences, residues and marked
+ columns will be deselected.
Use
+ <ESCAPE> to deselect all.
+
+ Invert Sequence Selection (Control I)
+ Any sequence ids currently not selected will replace the
+ current selection.
+ Invert Column Selection (Control Alt I)
+ Any columns currently not selected will replace the current
+ column selection.
+ Create Group (Control G)
Create
+ a group containing the currently selected sequences.
+ Remove Group (Shift Control G)
Ungroup
+ the currently selected sequence group.
+ Make Groups for selection
The
+ currently selected groups of the alignment will be subdivided
+ according to the contents of the currently selected region.
Use
+ this to subdivide an alignment based on the different
+ combinations of residues at marked columns.
+
+ Undefine Groups (Control U)
+ The alignment will be reset with no defined groups.
+ WARNING: This cannot be undone.
+
+ Select/Hide
+ Columns by Annotation
Select or Hide columns
+ in the alignment according to secondary structure, labels and
+ values shown in alignment annotation rows.
+ Select Highlighted Columns
Selects
+ the columns currently highlighted as a result of a find, mouse
+ over, or selection event from a linked structure viewer or other
+ application. Modifiers will work on some platforms: ALT will add
+ all but the highlighted set to the column selection, and CTRL
+ (or META) will toggle the selection.
+