X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwselect.html;h=07828a3a26238e40ea706adb7e57d175f57a4fb5;hb=b9312fcb8dd554b3d25b52b6ff4c2ecb6e08d992;hp=7c5085ab9ab8e3ccd89ba54b56622c33cf9863c6;hpb=6aaed756a227469cc3f093e45c2bb38799450b60;p=jalview.git diff --git a/help/html/menus/alwselect.html b/help/html/menus/alwselect.html index 7c5085a..07828a3 100644 --- a/help/html/menus/alwselect.html +++ b/help/html/menus/alwselect.html @@ -1,32 +1,78 @@ + -Alignment Window Menus - -

Alignment Window Select Menu

Find... - (Control F)
- Opens the Find dialog box to search for residues, sequence name or - residue position within the alignment and create new sequence features - from the queries. -
Select All (Control A)
- Selects all the sequences and residues in the alignment.
- Use <CTRL> and A (<APPLE> and A on a MacOSX) to select all.

-
Deselect All (Escape)
- Removes the current selection box (red dashed box) from the - alignment window. All selected sequences, residues and marked columns - will be deselected.
- Use <ESCAPE> to deselect all.
-
Invert Sequence Selection (Control I)
- Any sequence ids currently not selected will replace the - current selection.
-
Invert Column Selection (Control Alt I)
- Any columns currently not selected will replace the current - column selection.
-
Undefine Groups (Control U)
- The alignment will be reset with no defined groups.
- WARNING: This cannot be undone.
-

+
+ Alignment Window Select Menu +
+

+ +
Find... + (Control F)
Opens the Find dialog box to + search for residues, sequence name or residue position within + the alignment and create new sequence features from the queries. + +

Select All (Control A)
+ Selects all the sequences and residues in the alignment.
+ Use <CTRL> and A (<APPLE> and A on a MacOSX) to + select all. +
Deselect All (Escape)
+ Removes the current selection box (red dashed box) from the + alignment window. All selected sequences, residues and marked + columns will be deselected.
Use + <ESCAPE> to deselect all. +
Invert Sequence Selection (Control I)
+ Any sequence ids currently not selected will replace the + current selection.
Invert Column Selection (Control Alt I)
+ Any columns currently not selected will replace the current + column selection.
Create Group (Control G)
Create + a group containing the currently selected sequences.
Remove Group (Shift Control G)
Ungroup + the currently selected sequence group.
Make Groups for selection
The + currently selected groups of the alignment will be subdivided + according to the contents of the currently selected region.
Use + this to subdivide an alignment based on the different + combinations of residues at marked columns. +
Undefine Groups (Control U)
+ The alignment will be reset with no defined groups.
+ WARNING: This cannot be undone. +
Select/Hide + Columns by Annotation
Select or Hide columns + in the alignment according to secondary structure, labels and + values shown in alignment annotation rows.
Select Highlighted Columns
Selects + the columns currently highlighted as a result of a find, mouse + over, or selection event from a linked structure viewer or other + application. Modifiers will work on some platforms: ALT will add + all but the highlighted set to the column selection, and CTRL + (or META) will toggle the selection.