X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwview.html;fp=help%2Fhtml%2Fmenus%2Falwview.html;h=e8fce8419dd2d08a6769acb936cc36a2b2e1fcaf;hb=b8810711642d8473325c8a3d3e76cc5c3c9b5bbd;hp=cb3870816a13d7b5eab42c3b3a5f57a65972d8c3;hpb=936d4dc095734df2b1e9f3bf9e0bd29b9c86434c;p=jalview.git
diff --git a/help/html/menus/alwview.html b/help/html/menus/alwview.html
index cb38708..e8fce84 100755
--- a/help/html/menus/alwview.html
+++ b/help/html/menus/alwview.html
@@ -38,43 +38,6 @@
All hidden Columns / Sequences / Sequences and Columns will be revealed.
Hide→(all Columns / Sequences / Selected Region / All but Selected Region)
Hides the currently selected Columns / Sequences / Region or everything but the selected Region.
- Show Annotations
- If this is selected the "Annotation Panel" will be
- displayed below the alignment. The default setting is to display the conservation
- calculation, quality calculation and consensus values as bar charts.
- Show All Annotations
- Show all available annotations on the alignment. You can selectively hide these from the Popup
- or Annotation menus. (Since Jalview 2.8.2)
- Hide All Annotations
- Hide all annotations on the alignment. (Since Jalview 2.8.2)
- Autocalculated Annotation
Settings for the display of autocalculated annotation.
- -
- Apply to all groups
- When ticked, any modification to the current settings will be applied to all autocalculated annotation.
-
- -
- Show Consensus Histogram
- Enable or disable the display of the histogram above the consensus sequence.
-
- -
- Show Consensus Logo
- Enable or disable the display of the sequence logo above the consensus sequence.
-
- - Normalise Consensus Logo
- When enabled, scales all logo stacks to the same height,
- making it easier to compare symbol diversity in highly variable
- regions.
-
- -
- Group Conservation
- When ticked, display a conservation row for all groups (only available for protein alignments).
-
- -
- Apply to all groups
- When ticked, display a consensus row for all groups.
-
-
-
Automatic Scrolling
When selected, the view will automatically scroll to display the
highlighted sequence position corresponding to the position under the mouse