X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwview.html;h=20283044dbeef3eacb3c7b7fed7c4c1b9979300f;hb=refs%2Fheads%2Fbug%2FJAL-2255_seq-fetcher-broken-on-linux;hp=db1bfb164ac7665de75bb481cb3faf2a3e159978;hpb=de255c8c87707a2cd2a2a15f5ad04ed10fe5846d;p=jalview.git
diff --git a/help/html/menus/alwview.html b/help/html/menus/alwview.html
index db1bfb1..2028304 100755
--- a/help/html/menus/alwview.html
+++ b/help/html/menus/alwview.html
@@ -24,44 +24,53 @@
-Alignment Window View Menu
-
- - New View (Control T)
- Creates a new view from the current alignment view.
- - Expand Views (X)
- Display each view associated with the alignment in its own alignment window,
- allowing several views to be displayed simultaneously.
- - Gather Views (G)
- Each view associated with the alignment will be displayed within its own tab
- on the current alignment window.
- - Show→(all Columns / Sequences / Sequences and Columns)
- All hidden Columns / Sequences / Sequences and Columns will be revealed.
- - Hide→(all Columns / Sequences / Selected Region / All but Selected Region)
- Hides the currently selected Columns / Sequences / Region or everything but the selected Region.
- - Automatic Scrolling
- When selected, the view will automatically scroll to display the
- highlighted sequence position corresponding to the position under the mouse
- pointer in a linked alignment or structure view.
-
- - Show Sequence Features
- Show or hide sequence features on this alignment.
- - Sequence Feature Settings...
- Opens the Sequence Feature Settings dialog box to control the colour and display
- of sequence features on the alignment, and configure and retrieve features
- from DAS annotation servers.
- - Sequence ID Tooltip (application only)
-
This submenu's options allow the inclusion or exclusion of
- non-positional sequence features or database cross references
- from the tooltip shown when the mouse hovers over the sequence ID panel.
- - Alignment Properties...
- Displays some simple statistics computed for the
- current alignment view and any named properties defined on the
- whole alignment.
- - Overview Window
- A scaled version of the alignment will be displayed in a small
- window. A red box will indicate the currently visible area of the alignment.
- Move the visible region using the mouse.
-
-
+
+ Alignment Window View Menu
+
+
+ - New View (Control T)
+ Creates a new view from the current alignment view.
+ - Expand Views (X)
Display
+ each view associated with the alignment in its own alignment
+ window, allowing several views to be displayed simultaneously.
+ - Gather Views (G)
Each
+ view associated with the alignment will be displayed within its
+ own tab on the current alignment window.
+ - Show→(all Columns / Sequences /
+ Sequences and Columns)
All hidden Columns /
+ Sequences / Sequences and Columns will be revealed.
+ - Hide→(all Columns / Sequences /
+ Selected Region / All but Selected Region)
+ Hides the currently selected Columns / Sequences / Region or
+ everything but the selected Region.
+ - Automatic Scrolling
+ When selected, the view will automatically scroll to
+ display the highlighted sequence position corresponding to the
+ position under the mouse pointer in a linked alignment or
+ structure view.
+ - Show Sequence Features
Show
+ or hide sequence features on this alignment.
+ - Sequence
+ Feature Settings...
Opens the Sequence
+ Feature Settings dialog box to control the colour and display of
+ sequence features on the alignment, and configure and retrieve
+ features from DAS annotation servers.
+ - Sequence ID Tooltip (application
+ only)
This submenu's options allow the inclusion or
+ exclusion of non-positional sequence features or database cross
+ references from the tooltip shown when the mouse hovers over the
+ sequence ID panel.
+
+ - Alignment Properties...
+ Displays some simple statistics computed for the current
+ alignment view and any named properties defined on the whole
+ alignment.
+ - Overview
+ Window
A scaled version of the alignment
+ will be displayed in a small window. A red box will indicate the
+ currently visible area of the alignment. Move the visible region
+ using the mouse.
+
+