X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwview.html;h=2cf52db78b727f73fe8b2e75fec5d7b64eb5a792;hb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;hp=a2aa0c96131f371b99911438877e528f950956a4;hpb=57fa882fcd2d85ef524a027fe9883ce8c99649a3;p=jalview.git diff --git a/help/html/menus/alwview.html b/help/html/menus/alwview.html index a2aa0c9..2cf52db 100755 --- a/help/html/menus/alwview.html +++ b/help/html/menus/alwview.html @@ -1,4 +1,21 @@ + Alignment Window Menus @@ -14,14 +31,42 @@
  • Gather Views (G)
    Each view associated with the alignment will be displayed within its own tab on the current alignment window.
    • -
  • Show→(all Columns / Sequences)
    - All hidden Columns / Sequences will be revealed.
    • -
  • Hide→(all Columns / Sequences)
    - Hides the currently selected Columns / Sequences
    • +
  • Show→(all Columns / Sequences / Sequences and Columns )
    + All hidden Columns / Sequences / Sequences and Columns will be revealed.
    • +
  • Hide→(all Columns / Sequences / Selected Region / All but Selected Region)
    + Hides the currently selected Columns / Sequences / Region or everything but the selected Region.
  • Show Annotations
    If this is selected the "Annotation Panel" will be displayed below the alignment. The default setting is to display the conservation calculation, quality calculation and consensus values as bar charts.
    • +
  • Autocalculated Annotation
    Settings for the display of autocalculated annotation. + +
    • +
  • Automatic Scrolling
    +     When selected, the view will automatically scroll to display the + highlighted sequence position corresponding to the position under the mouse + pointer in a linked alignment or structure view. +
  • Show Sequence Features
    Show or hide sequence features on this alignment.
  • Seqence Feature Settings...