X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwview.html;h=3d2d3beeb3ab0666dbc18b98762025e00c0b4abe;hb=e1cd94839128776e14e51ded3f3be2dcc7e72273;hp=2cf52db78b727f73fe8b2e75fec5d7b64eb5a792;hpb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;p=jalview.git
diff --git a/help/html/menus/alwview.html b/help/html/menus/alwview.html
index 2cf52db..3d2d3be 100755
--- a/help/html/menus/alwview.html
+++ b/help/html/menus/alwview.html
@@ -1,21 +1,24 @@
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
Alignment Window Menus
@@ -49,10 +52,15 @@
Enable or disable the display of the histogram above the consensus sequence.
- Show Consensus Profile
+ Show Consensus Logo
Enable or disable the display of the sequence logo above the consensus sequence.
-
+ Normalise Consensus Logo
+ When enabled, scales all logo stacks to the same height,
+ making it easier to compare symbol diversity in highly variable
+ regions.
+
+
Group Conservation
When ticked, display a conservation row for all groups (only available for protein alignments).