X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwview.html;h=3d2d3beeb3ab0666dbc18b98762025e00c0b4abe;hb=e5cbd35e13f46ae1d59a08b0af1086677418141d;hp=b34e6928d8912d393608e4aa60f5431cf8c5b68c;hpb=1d5612858f8384e57ff461990d8bafb149898073;p=jalview.git
diff --git a/help/html/menus/alwview.html b/help/html/menus/alwview.html
index b34e692..3d2d3be 100755
--- a/help/html/menus/alwview.html
+++ b/help/html/menus/alwview.html
@@ -1,4 +1,24 @@
+
Alignment Window Menus
@@ -32,10 +52,15 @@
Enable or disable the display of the histogram above the consensus sequence.
- Show Consensus Profile
+ Show Consensus Logo
Enable or disable the display of the sequence logo above the consensus sequence.
-
+ Normalise Consensus Logo
+ When enabled, scales all logo stacks to the same height,
+ making it easier to compare symbol diversity in highly variable
+ regions.
+
+
Group Conservation
When ticked, display a conservation row for all groups (only available for protein alignments).