X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwview.html;h=4248f9a36d6ac5ae1bd287209124338996e3b0dc;hb=b2f9a8d7bce642ff4011bc6d49e02bb0569fbb11;hp=75e3904384f58009f56d4103e4943f61a97c3159;hpb=0696cffbccbb537be78d9fc2410589adbcd7be35;p=jalview.git
diff --git a/help/html/menus/alwview.html b/help/html/menus/alwview.html
index 75e3904..4248f9a 100755
--- a/help/html/menus/alwview.html
+++ b/help/html/menus/alwview.html
@@ -1,20 +1,21 @@
Alignment Window Menus
@@ -49,10 +50,15 @@
Enable or disable the display of the histogram above the consensus sequence.
- Show Consensus Profile
+ Show Consensus Logo
Enable or disable the display of the sequence logo above the consensus sequence.
-
+ Normalise Consensus Logo
+ When enabled, scales all logo stacks to the same height,
+ making it easier to compare symbol diversity in highly variable
+ regions.
+
+
Group Conservation
When ticked, display a conservation row for all groups (only available for protein alignments).