X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwview.html;h=53ae079702193aaf7cf8a4bc1d1d569a02d0d10c;hb=3b94f01f4edf56896ae3b5f0ce6cb4f1996e7bbc;hp=e068a45086ecf8cf3753300cce53e868476bc00c;hpb=c53aeee9a688f68d64106a968876e542f701fbc6;p=jalview.git

diff --git a/help/html/menus/alwview.html b/help/html/menus/alwview.html
index e068a45..53ae079 100755
--- a/help/html/menus/alwview.html
+++ b/help/html/menus/alwview.html
@@ -1,14 +1,14 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -49,10 +49,15 @@
     	Enable or disable the display of the histogram above the consensus sequence.
     	</li>
     	<li>
-    	<strong>Show Consensus Profile<br></strong>
+    	<strong>Show Consensus Logo<br></strong>
 		Enable or disable the display of the sequence logo above the consensus sequence.
     	</li>
-    	<li>
+				<li><strong>Normalise Consensus Logo<br>
+				</strong><em>When enabled, scales all logo stacks to the same height,
+						making it easier to compare symbol diversity in highly variable
+						regions.</em></li>
+
+				<li>
     	<strong>Group Conservation<br></strong>
     	When ticked, display a conservation row for all groups (only available for protein alignments).
     	</li>
