X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwview.html;h=d83d1050ae19f3e079e89395f506108a0de1a6f2;hb=ad4c2e9e85533f3a375d92deb45c59318bebdfef;hp=608854617552d7b9a394015c9dbcf23c02380758;hpb=b5edbd2a03d16372bc3e8019ddbf3840dcfe38ed;p=jalview.git
diff --git a/help/html/menus/alwview.html b/help/html/menus/alwview.html
index 6088546..d83d105 100755
--- a/help/html/menus/alwview.html
+++ b/help/html/menus/alwview.html
@@ -10,7 +10,13 @@
- Font
Change the font of the display from the "Choose Font"
- dialog box, which is shown when this item is selected.
+ dialog box, which is shown when this item is selected. Select a "Monospaced"
+ font for fast rendering of your alignment. The checkbox labelled "Monospaced"
+ indicates whether the chosen font uses characters all of the same width.
+
+ - Smooth Fonts
+ If selected, the alignment will be drawn with anti-aliasing on which looks
+ better, but performace is reduced.
- Wrap
When ticked, the alignment display is "wrapped"
@@ -51,7 +57,7 @@
displayed below the alignment. The default setting is to display the conservation
calculation, quality calculation and consensus values as bar charts.
- - Sequence Features
+ - Fetch Sequence Features
If the sequence names are Swissprot entries Jalview will use
the names to retrieve sequence features
from the EBI. Features which are 1 residue in length are coloured red, sequences
@@ -60,10 +66,12 @@
Note: The retrieved information will update the sequence start and end labels
if they are incorrect.
- - Seqence Settings
- If features have been added to the alignment then the priority of rendering
- the features can be altered so that overlapping features can be displayed
- or hidden. See Sequence Features.
+ - Show Sequence Features
Show or
+ hide sequence features on this alignment.
+ - Seqence Feature Settings...
+ Control the colour and display of sequence features on the
+ alignment. See Sequence Feature Settings.
- Overview Window
A scaled version of the alignment will be displayed in a small