X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwview.html;h=e55a7f71e8fafe885ac00f595b9568dcfc22df49;hb=ad15cff29620f960119f80176f1fd443da9f6763;hp=b252ff54e5f53216db257ea0aeafe0fdac678395;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git
diff --git a/help/html/menus/alwview.html b/help/html/menus/alwview.html
index b252ff5..e55a7f7 100755
--- a/help/html/menus/alwview.html
+++ b/help/html/menus/alwview.html
@@ -1,21 +1,24 @@
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
Alignment Window Menus
@@ -35,33 +38,6 @@
All hidden Columns / Sequences / Sequences and Columns will be revealed.
Hide→(all Columns / Sequences / Selected Region / All but Selected Region)
Hides the currently selected Columns / Sequences / Region or everything but the selected Region.
- Show Annotations
- If this is selected the "Annotation Panel" will be
- displayed below the alignment. The default setting is to display the conservation
- calculation, quality calculation and consensus values as bar charts.
- Autocalculated Annotation
Settings for the display of autocalculated annotation.
- -
- Apply to all groups
- When ticked, any modification to the current settings will be applied to all autocalculated annotation.
-
- -
- Show Consensus Histogram
- Enable or disable the display of the histogram above the consensus sequence.
-
- -
- Show Consensus Profile
- Enable or disable the display of the sequence logo above the consensus sequence.
-
- -
- Group Conservation
- When ticked, display a conservation row for all groups (only available for protein alignments).
-
- -
- Apply to all groups
- When ticked, display a consensus row for all groups.
-
-
-
Automatic Scrolling
When selected, the view will automatically scroll to display the
highlighted sequence position corresponding to the position under the mouse
@@ -69,7 +45,7 @@
Show Sequence Features
Show or hide sequence features on this alignment.
- Seqence Feature Settings...
+ Sequence Feature Settings...
Opens the Sequence Feature Settings dialog box to control the colour and display
of sequence features on the alignment, and configure and retrieve features
from DAS annotation servers.